This repository contains a collection of scripts and workflows that may be used as templates for amplicon and shotgun sequence data analysis.

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workflow_templates/Amplicon_dada2_MiSeq

History

chassenr 5660e3700d updated amplicon workflow schematic		1 week ago
..
assets	started preparing snakemake workflow for amplicon dada2 miseq	10 months ago
config	adapted amplicon workflow for directed and mixed orientation libraries	1 week ago
envs	added rescue unmerged option to amplicon workflow, testing	1 week ago
images	updated amplicon workflow schematic	1 week ago
scripts	adapted amplicon workflow for directed and mixed orientation libraries	1 week ago
CITATION.cff	updated licenses	2 months ago
LICENSE	added license and citation files, major update to taxonomy parsing in amplicon workflow	3 months ago
Snakefile_classification	adapted amplicon workflow for directed and mixed orientation libraries	1 week ago
Snakefile_denoising	adapted amplicon workflow for directed and mixed orientation libraries	1 week ago
Snakefile_trimming	adapted amplicon workflow for directed and mixed orientation libraries	1 week ago