This repository contains a collection of scripts and workflows that may be used as templates for amplicon and shotgun sequence data analysis.

You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.

Branch: master

master

Branches Tags

${ item.name }

Create tag ${ searchTerm }

Create branch ${ searchTerm }

from 'master'

${ noResults }

workflow_templates/Amplicon_dada2_MiSeq

History

Christiane Hassenrueck accfb4ab18 modified counting sequences in raw data to accept bz2 and gz compressed input; bug fix in denoising script		3 months ago
..
assets	started preparing snakemake workflow for amplicon dada2 miseq	2 years ago
config	included option in amplicon wf to combine denoised data with previously analyzed data set	3 months ago
envs	added rescue unmerged option to amplicon workflow, testing	9 months ago
images	updated amplicon workflow schematic	9 months ago
scripts	modified counting sequences in raw data to accept bz2 and gz compressed input; bug fix in denoising script	3 months ago
CITATION.cff	updated citation for amplicon workflow	4 months ago
LICENSE	added license and citation files, major update to taxonomy parsing in amplicon workflow	11 months ago
Snakefile_classification	cleaning of comments in amplicon classification rules	8 months ago
Snakefile_denoising	included option in amplicon wf to combine denoised data with previously analyzed data set	3 months ago
Snakefile_trimming	modified counting sequences in raw data to accept bz2 and gz compressed input; bug fix in denoising script	3 months ago