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This repository contains a collection of scripts and workflows that may be used as templates for amplicon and shotgun sequence data analysis.
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workflow_templates/Amplicon_dada2_MiSeq
History
chassenr 5660e3700d
updated amplicon workflow schematic
1 week ago
..
assets started preparing snakemake workflow for amplicon dada2 miseq 10 months ago
config adapted amplicon workflow for directed and mixed orientation libraries 1 week ago
envs added rescue unmerged option to amplicon workflow, testing 1 week ago
images updated amplicon workflow schematic 1 week ago
scripts adapted amplicon workflow for directed and mixed orientation libraries 1 week ago
CITATION.cff updated licenses 2 months ago
LICENSE added license and citation files, major update to taxonomy parsing in amplicon workflow 3 months ago
Snakefile_classification adapted amplicon workflow for directed and mixed orientation libraries 1 week ago
Snakefile_denoising adapted amplicon workflow for directed and mixed orientation libraries 1 week ago
Snakefile_trimming adapted amplicon workflow for directed and mixed orientation libraries 1 week ago
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