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This repository contains a collection of scripts and workflows that may be used as templates for amplicon and shotgun sequence data analysis.
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workflow_templates/Amplicon_dada2_MiSeq
Christiane Hassenrueck 757b58d09c
minor bugfixes in amplicon workflow 		3 months ago
..
assets started preparing snakemake workflow for amplicon dada2 miseq 2 years ago
config implemented user-configurable pool option for dada, bug fix SILVA taxonomy parsing 7 months ago
envs implemented user-configurable pool option for dada, bug fix SILVA taxonomy parsing 7 months ago
images updated amplicon workflow schematic 1 year ago
scripts minor bugfixes in amplicon workflow 3 months ago
CITATION.cff updated citation for amplicon workflow 12 months ago
LICENSE added license and citation files, major update to taxonomy parsing in amplicon workflow 2 years ago
Snakefile_classification bug fix organelle classification 7 months ago
Snakefile_denoising minor bugfixes in amplicon workflow 3 months ago
Snakefile_trimming minor bugfixes in amplicon workflow 3 months ago