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<!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! --> |
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<div class="cell" data-execution_count="1"> |
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<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> os, glob, re, argparse</span> |
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<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> subprocess <span class="im">as</span> sp</span> |
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<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a></span> |
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<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="bu">print</span>(<span class="st">"Remember to use 'module load cdo && module load nco'"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> |
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<pre><code>Remember to use 'module load cdo && module load nco'</code></pre> |
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<div class="cell" data-execution_count="3"> |
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<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="op">!</span>ls <span class="op">/</span>silod7<span class="op">/</span>boergel<span class="op">/</span>MOM_projections<span class="op">/</span><span class="dv">1961</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> |
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<pre><code>dsr_1961_remap.nc slp_1961_remap.nc |
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dsr.mom.dta.nc slp.mom.dta.nc |
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huss_1961_remap.nc snf_1961_remap.nc |
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huss.mom.dta.nc snf.mom.dta.nc |
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lsr_1961_remap.nc t2m_1961_obc.nc |
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lsr.mom.dta.nc t2m_1961_obc.nc.mom.dta.nc |
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precip_1961_obc.nc t2m_1961_remap.nc |
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precip_1961_obc.nc.mom.dta.nc t2m.mom.dta.nc |
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precip_1961_remap.nc uv10_1961_obc.nc |
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precip.mom.dta.nc uv10_1961_obc.nc.mom.dta.nc |
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slp_1961_obc.nc uv10_1961_remap.nc |
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slp_1961_obc.nc.mom.dta.nc uv10.mom.dta.nc</code></pre> |
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</div> |
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<div class="cell" data-execution_count="46"> |
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<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="kw">def</span> mergetime(data_path, year, suffix):</span> |
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<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="ss">f"</span><span class="sc">{</span>data_path<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>year<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>suffix<span class="sc">}</span><span class="ss">"</span>) </span> |
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<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a> files <span class="op">=</span> glob.glob(<span class="ss">f"</span><span class="sc">{</span>data_path<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>year<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>suffix<span class="sc">}</span><span class="ss">"</span>)</span> |
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<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(files)</span> |
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<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a> </span> |
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<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a> <span class="cf">for</span> <span class="bu">file</span> <span class="kw">in</span> files:</span> |
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<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a> </span> |
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<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a> <span class="co"># get file name as string and remove .nc</span></span> |
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<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a> fname <span class="op">=</span> os.path.basename(<span class="bu">file</span>).strip(<span class="st">".nc"</span>) </span> |
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<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(fname)</span> |
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<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a> <span class="co"># sometimes the file name itself contains some year information</span></span> |
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<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> <span class="bu">str</span>(year) <span class="kw">in</span> fname:</span> |
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<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a> <span class="co"># we replace the year with the * flag</span></span> |
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<span id="cb5-14"><a href="#cb5-14" aria-hidden="true" tabindex="-1"></a> <span class="co"># this helps to search for previous years</span></span> |
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<span id="cb5-15"><a href="#cb5-15" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="st">"Found <year> in string ... adapting"</span>)</span> |
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<span id="cb5-16"><a href="#cb5-16" aria-hidden="true" tabindex="-1"></a> fnameSearch <span class="op">=</span> fname.replace(<span class="bu">str</span>(year), <span class="st">"*"</span>)</span> |
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<span id="cb5-17"><a href="#cb5-17" aria-hidden="true" tabindex="-1"></a> <span class="cf">else</span>:</span> |
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<span id="cb5-18"><a href="#cb5-18" aria-hidden="true" tabindex="-1"></a> fnameSearch <span class="op">=</span> fname</span> |
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<span id="cb5-19"><a href="#cb5-19" aria-hidden="true" tabindex="-1"></a> <span class="co"># Search for previous and past year</span></span> |
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<span id="cb5-20"><a href="#cb5-20" aria-hidden="true" tabindex="-1"></a> fpath_prev <span class="op">=</span> glob.glob(<span class="ss">f"</span><span class="sc">{</span>data_path<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>year<span class="op">-</span><span class="dv">1</span><span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>fnameSearch<span class="sc">}</span><span class="ss">.nc"</span>)</span> |
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<span id="cb5-21"><a href="#cb5-21" aria-hidden="true" tabindex="-1"></a> fpath_past <span class="op">=</span> glob.glob(<span class="ss">f"</span><span class="sc">{</span>data_path<span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>year<span class="op">+</span><span class="dv">1</span><span class="sc">}</span><span class="ss">/</span><span class="sc">{</span>fnameSearch<span class="sc">}</span><span class="ss">.nc"</span>)</span> |
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<span id="cb5-22"><a href="#cb5-22" aria-hidden="true" tabindex="-1"></a> </span> |
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<span id="cb5-23"><a href="#cb5-23" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> os.path.isfile(fpath_prev):</span> |
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<span id="cb5-24"><a href="#cb5-24" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="st">"Found previous month"</span>)</span> |
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<span id="cb5-25"><a href="#cb5-25" aria-hidden="true" tabindex="-1"></a> sp.check_call(<span class="st">"cdo seldate,</span><span class="sc">{}</span><span class="st">-12-01T00:00:00,</span><span class="sc">{}</span><span class="st">-01-01T00:00:00 -setcalendar,standard </span><span class="sc">{}</span><span class="st"> tmp1.nc"</span>.<span class="bu">format</span>(year<span class="op">-</span><span class="dv">1</span>, year, fpath_prev), shell<span class="op">=</span><span class="va">True</span>)</span> |
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<span id="cb5-26"><a href="#cb5-26" aria-hidden="true" tabindex="-1"></a> fpath_prev <span class="op">=</span> <span class="st">"tmp1.nc"</span></span> |
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<span id="cb5-27"><a href="#cb5-27" aria-hidden="true" tabindex="-1"></a> <span class="cf">else</span>:</span> |
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<span id="cb5-28"><a href="#cb5-28" aria-hidden="true" tabindex="-1"></a> fpath_prev <span class="op">=</span> <span class="st">""</span></span> |
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<span id="cb5-29"><a href="#cb5-29" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> os.path.isfile(fpath_past):</span> |
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<span id="cb5-30"><a href="#cb5-30" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="st">"Found past month"</span>)</span> |
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<span id="cb5-31"><a href="#cb5-31" aria-hidden="true" tabindex="-1"></a> sp.check_call(<span class="st">"cdo seldate,</span><span class="sc">{}</span><span class="st">-01-01T00:00:00,</span><span class="sc">{}</span><span class="st">-01-31T23:59:59 -setcalendar,standard </span><span class="sc">{}</span><span class="st"> tmp3.nc"</span>.<span class="bu">format</span>(year, year<span class="op">+</span><span class="dv">1</span>, fpath_past), shell<span class="op">=</span><span class="va">True</span>)</span> |
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<span id="cb5-32"><a href="#cb5-32" aria-hidden="true" tabindex="-1"></a> fpath_past <span class="op">=</span> <span class="st">"tmp3.nc"</span></span> |
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<span id="cb5-33"><a href="#cb5-33" aria-hidden="true" tabindex="-1"></a> <span class="cf">else</span>:</span> |
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<span id="cb5-34"><a href="#cb5-34" aria-hidden="true" tabindex="-1"></a> fpath_past <span class="op">=</span> <span class="st">""</span></span> |
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<span id="cb5-35"><a href="#cb5-35" aria-hidden="true" tabindex="-1"></a></span> |
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<span id="cb5-36"><a href="#cb5-36" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="st">"MERGING </span><span class="sc">{}</span><span class="st"> to </span><span class="sc">{}{}</span><span class="st">/</span><span class="sc">{}</span><span class="st">.mom.dta.nc"</span>.<span class="bu">format</span>(<span class="bu">file</span>,data_path,YEAR,fname))</span> |
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<span id="cb5-37"><a href="#cb5-37" aria-hidden="true" tabindex="-1"></a> sp.check_call(<span class="st">"cdo -O mergetime </span><span class="sc">{}</span><span class="st"> </span><span class="sc">{}</span><span class="st"> </span><span class="sc">{}</span><span class="st"> </span><span class="sc">{}{}</span><span class="st">/</span><span class="sc">{}</span><span class="st">.mom.dta.nc"</span>.<span class="bu">format</span>(fpath_prev,<span class="bu">file</span>,fpath_past,data_path,YEAR,fname),shell <span class="op">=</span><span class="va">True</span>)</span> |
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<span id="cb5-38"><a href="#cb5-38" aria-hidden="true" tabindex="-1"></a> sp.check_call(<span class="st">"ncatted -a calendar,time,o,c,julian </span><span class="sc">{}{}</span><span class="st">/</span><span class="sc">{}</span><span class="st">.mom.dta.nc"</span>.<span class="bu">format</span>(data_path,YEAR,fname),shell<span class="op">=</span><span class="va">True</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> |
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</div> |
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<div class="cell" data-execution_count="47"> |
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<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a>fname<span class="op">=</span><span class="st">"snf_1962_remap"</span></span> |
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<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a>fname.replace(<span class="st">"1962"</span>, <span class="st">"*"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> |
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<div class="cell-output cell-output-display" data-execution_count="47"> |
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<pre><code>'snf_*_remap'</code></pre> |
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</div> |
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</div> |
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<div class="cell" data-execution_count="48"> |
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<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="co">#mergetime("/silod7/boergel/MOM_projections", year=1962, suffix="*????_remap*")</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> |
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<div class="cell-output cell-output-stdout"> |
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<pre><code>/silod7/boergel/MOM_projections/1962/*????_remap* |
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['/silod7/boergel/MOM_projections/1962/snf_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/t2m_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/dsr_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/lsr_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/huss_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/precip_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/slp_1962_remap.nc', '/silod7/boergel/MOM_projections/1962/uv10_1962_remap.nc'] |
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snf_1962_remap |
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Found <year> in string ... adapting |
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snf_1962_remap |
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snf_*_remap |
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['/silod7/boergel/MOM_projections/1961/snf_1961_remap.nc']</code></pre> |
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</body></html> |
Florian Börgel
9 months ago
