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Adapted build scripts

distribute-radiation-on-surface-types
Sven Karsten 2 years ago
parent
22a01d0e7d
commit
a31009d941
8 changed files with 154 additions and 45 deletions
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  1. 28
      build.sh
  2. 63
      build_haumea.sh
  3. 16
      build_library.sh
  4. 15
      build_local.sh
  5. 63
      build_phy-2.sh
  6. 6
      src/.vscode/tasks.json
  7. 4
      start_build_haumea.sh
  8. 4
      start_build_phy-2.sh

28
build.sh
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@ -1,16 +1,22 @@
target=$1
debug=${2:-"release"}
fast=${3:-"fast"}
source ../../local_scripts/identify_target.sh $target $debug $fast
FC=mpiifort
# component to build
component="flux_calculator"
mkdir build
cd build
# deploy the code from local source
echo rsync -r -i -u src ${dest}/components/${component}/.
echo rsync -i -u start_build_${target}.sh ${dest}/components/${component}/
echo rsync -i -u build_${target}.sh ${dest}/components/${component}/
rsync -r -i -u src ${dest}/components/${component}/.
rsync -i -u start_build_${target}.sh ${dest}/components/${component}/
rsync -i -u build_${target}.sh ${dest}/components/${component}/
$FC -c ../src/flux_lib/constants/*.F90
$FC -c ../src/flux_lib/auxiliaries/*.F90
$FC -c ../src/flux_lib/mass/*.F90
$FC -c ../src/flux_lib/heat/*.F90
$FC -c ../src/flux_lib/momentum/*.F90
$FC -c ../src/flux_lib/*.F90
#$FC -shared -o flux_library.so ../src/flux_lib/*.F90
# start the build process
echo ssh -t "${user_at_dest}" "cd ${dest_folder}/components/${component}/; bash -c \"source ~/.bash_profile; source start_build_${target}.sh $debug $fast\""
ssh -t "${user_at_dest}" "cd ${dest_folder}/components/${component}/; bash -c \"source ~/.bash_profile; source start_build_${target}.sh $debug $fast\""
cd ..
echo "$component $target $debug $fast" > ../LAST_BUILD

63
build_haumea.sh
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#!/bin/bash
debug=${1:-"release"}
rebuild=${2:-"fast"}
module load intel/19.1.0
module load openmpi/intel.19/3.1.6
module load netcdf/intel.19/4.7.4
FC=mpifort
AR=ar
IOW_ESM_ROOT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )/../.."
# SET SYSTEM-SPECIFIC COMPILER OPTIONS AND PATHS
# include paths
IOW_ESM_NETCDF_INCLUDE="${NETCDF_INCLUDE_PATH}"
IOW_ESM_NETCDF_LIBRARY="${NETCDF_LIBRARY_PATH}"
OASIS3_LIB="${IOW_ESM_ROOT}/components/OASIS3-MCT/oasis3-mct/IOW_ESM_PRODUCTION"
INCLUDES="-I ${OASIS3_LIB}/build/lib/mct \
-I${OASIS3_LIB}/build/lib/psmile.MPI1 \
-I ${OASIS3_LIB}/build/lib/psmile.MPI1 \
-I ${OASIS3_LIB}/build/lib/mct \
${OASIS3_LIB}/lib/libpsmile.MPI1.a \
${OASIS3_LIB}/lib/libmct.a \
${OASIS3_LIB}/lib/libmpeu.a \
${OASIS3_LIB}/lib/libscrip.a \
-I${IOW_ESM_NETCDF_INCLUDE}"
LIBS="-lnetcdf -lnetcdff -L${IOW_ESM_NETCDF_LIBRARY}"
if [ $debug == "debug" ]; then
FFLAGS="-O0 -r8 -fp-model precise -xHost -DUSE_DOUBLE_PRECISION -g -traceback -check all"
else
FFLAGS="-O3 -r8 -no-prec-div -fp-model fast=2 -xHost -DUSE_DOUBLE_PRECISION"
fi
rm -r build
rm -r bin
mkdir build
mkdir bin
cd build
$FC -c $FFLAGS ../src/flux_lib/constants/*.F90
$FC -c $FFLAGS ../src/flux_lib/auxiliaries/*.F90
$FC -c $FFLAGS ../src/flux_lib/mass/*.F90
$FC -c $FFLAGS ../src/flux_lib/heat/*.F90
$FC -c $FFLAGS ../src/flux_lib/momentum/*.F90
$FC -c $FFLAGS ../src/flux_lib/radiation/*.F90
$FC -c $FFLAGS ../src/flux_lib/*.F90
rm flux_library.a
$AR rv flux_library.a *.o
#$FC -c $FFLAGS ../src/routine_hdlerr.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/function_sent.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/read_grid.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/decomp_def.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/read_dimgrid.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
$FC -c $FFLAGS ../src/flux_calculator_basic.F90
$FC -c $FFLAGS ../src/flux_calculator_prepare.F90
$FC -c $FFLAGS ../src/flux_calculator_calculate.F90
$FC -c $FFLAGS ../src/flux_calculator_io.F90 -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
$FC $FFLAGS -o ../bin/flux_calculator ../src/flux_calculator.F90 flux_calculator_basic.o flux_calculator_prepare.o flux_calculator_calculate.o flux_calculator_io.o flux_library.a $INCLUDES $LIBS -Wl,-rpath,${IOW_ESM_NETCDF_LIBRARY}
cd ..

16
build_library.sh
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@ -1,16 +0,0 @@
FC=mpiifort
mkdir build
cd build
$FC -c ../src/flux_lib/constants/*.F90
$FC -c ../src/flux_lib/auxiliaries/*.F90
$FC -c ../src/flux_lib/mass/*.F90
$FC -c ../src/flux_lib/heat/*.F90
$FC -c ../src/flux_lib/momentum/*.F90
$FC -c ../src/flux_lib/*.F90
#$FC -shared -o flux_library.so ../src/flux_lib/*.F90
cd ..

15
build_local.sh
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@ -1,15 +0,0 @@
FC=gfortran
rm -rf build_local
mkdir build_local
cd build_local
$FC -c ../src/flux_lib/constants/*.F90
$FC -c ../src/flux_lib/auxiliaries/*.F90
$FC -c ../src/flux_lib/mass/*.F90
$FC -c ../src/flux_lib/heat/*.F90
$FC -c ../src/flux_lib/momentum/*.F90
$FC -c ../src/flux_lib/*.F90
#$FC -shared -o flux_library.so ../src/flux_lib/*.F90
cd ..

63
build_phy-2.sh
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@ -0,0 +1,63 @@
#!/bin/bash
debug=${1:-"release"}
rebuild=${2:-"fast"}
module load intel/2017.1.132
module load openmpi-intel/2.0.1-ifort-2017.1.132
module load netcdf/4.7.4-intel_2017
FC=mpifort
AR=ar
IOW_ESM_ROOT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )/../.."
# SET SYSTEM-SPECIFIC COMPILER OPTIONS AND PATHS
# include paths
IOW_ESM_NETCDF_INCLUDE="${NETCDF_INC}"
IOW_ESM_NETCDF_LIBRARY="${NETCDF_LIB}"
OASIS3_LIB="${IOW_ESM_ROOT}/components/OASIS3-MCT/oasis3-mct/IOW_ESM_PRODUCTION"
INCLUDES="-I ${OASIS3_LIB}/build/lib/mct \
-I${OASIS3_LIB}/build/lib/psmile.MPI1 \
-I ${OASIS3_LIB}/build/lib/psmile.MPI1 \
-I ${OASIS3_LIB}/build/lib/mct \
${OASIS3_LIB}/lib/libpsmile.MPI1.a \
${OASIS3_LIB}/lib/libmct.a \
${OASIS3_LIB}/lib/libmpeu.a \
${OASIS3_LIB}/lib/libscrip.a \
-I${IOW_ESM_NETCDF_INCLUDE}"
LIBS="-lnetcdf -lnetcdff -L${IOW_ESM_NETCDF_LIBRARY}"
if [ $debug == "debug" ]; then
FFLAGS="-O0 -r8 -fp-model precise -xHost -DUSE_DOUBLE_PRECISION -g -traceback -check all"
else
FFLAGS="-O3 -r8 -no-prec-div -fp-model fast=2 -xHost -DUSE_DOUBLE_PRECISION"
fi
rm -r build
rm -r bin
mkdir build
mkdir bin
cd build
$FC -c $FFLAGS ../src/flux_lib/constants/*.F90
$FC -c $FFLAGS ../src/flux_lib/auxiliaries/*.F90
$FC -c $FFLAGS ../src/flux_lib/mass/*.F90
$FC -c $FFLAGS ../src/flux_lib/heat/*.F90
$FC -c $FFLAGS ../src/flux_lib/momentum/*.F90
$FC -c $FFLAGS ../src/flux_lib/radiation/*.F90
$FC -c $FFLAGS ../src/flux_lib/*.F90
rm flux_library.a
$AR rv flux_library.a *.o
#$FC -c $FFLAGS ../src/routine_hdlerr.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/function_sent.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/read_grid.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/decomp_def.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
#$FC -c $FFLAGS ../src/read_dimgrid.F90 -DUSE_DOUBLE_PRECISION -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
$FC -c $FFLAGS ../src/flux_calculator_basic.F90
$FC -c $FFLAGS ../src/flux_calculator_prepare.F90
$FC -c $FFLAGS ../src/flux_calculator_calculate.F90
$FC -c $FFLAGS ../src/flux_calculator_io.F90 -I${IOW_ESM_NETCDF_INCLUDE} $LIBS
$FC $FFLAGS -o ../bin/flux_calculator ../src/flux_calculator.F90 flux_calculator_basic.o flux_calculator_prepare.o flux_calculator_calculate.o flux_calculator_io.o flux_library.a $INCLUDES $LIBS -Wl,-rpath,${IOW_ESM_NETCDF_LIBRARY}
cd ..

6
src/.vscode/tasks.json vendored
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@ -45,7 +45,7 @@
{
"label": "build_flux_calculator_haumea",
"type": "shell",
"command": "cd /media/e/Projects/IOW_ESM/components/flux_calculator; rsync -r -i -u src haumea1:/data/sk1480/IOW_ESM/components/flux_calculator/.; ssh -t haumea1 'cd /data/sk1480/IOW_ESM/components/flux_calculator/; srun -t 01:00:00 -p compute -N1 --tasks-per-node 1 --pty bash -c \"source ~/.bash_profile; source build_debug.sh\"'",
"command": "cd ${workspaceRoot}/../; ./build.sh haumea",
"group": {
"kind": "build",
"isDefault": true
@ -72,7 +72,7 @@
{
"label": "build_flux_calculator_phy-2",
"type": "shell",
"command": "cd /media/d/IOW_ESM/components/flux_calculator; rsync -r -i -u src karsten@phy-2:/silod7/karsten/IOW_ESM/components/flux_calculator/.; ssh -t karsten@phy-2 'cd /silod7/karsten/IOW_ESM/components/flux_calculator/; source build_debug.sh'",
"command": "cd ${workspaceRoot}/../; ./build.sh phy-2",
"group": {
"kind": "build",
"isDefault": true
@ -99,7 +99,7 @@
{
"label": "run_IOW_ESM_haumea",
"type": "shell",
"command": "ssh -t haumea1 'cd /data/sk1480/IOW_ESM/scripts/run; source ~/.bash_profile; sbatch jobscript'",
"command": "cd ${workspaceRoot}/../../../; ./run.sh haumea",
"group": {
"kind": "test",
"isDefault": true

4
start_build_haumea.sh
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@ -0,0 +1,4 @@
debug=${1:-"debug"} # debug/release
fast=${2:-"fast"} # fast/rebuild
srun -t 01:00:00 -p compute -N1 --tasks-per-node 1 --pty bash -c "source ~/.bash_profile; source build_haumea.sh ${debug} ${fast}"

4
start_build_phy-2.sh
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debug=${1:-"debug"} # debug/release
fast=${2:-"fast"} # fast/rebuild
source build_phy-2.sh ${debug} ${fast}
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