Copy files and do not only create symbolic links when deploying
within the same machine.
This enables easier modification of inputs in the target directory.
Importantly, base setups should not contain large files anymore.
Fixed bug with --size-only flag. This was not reliable.
Now timestamps are preserved when deploying the setup.
Thus, timestamp and size are checked when archiving
(this is also the default behavior of rsync)
- SETUP_INFO file on target is updated after archiving
- updating setup before running is now tagged in UPDATE_SETUP_INFO
- SETUPS.example is updated accordingly
- Readme.md is updated accordingly and extended further